rs3142530 SNP Detail

Summary

• ID
  rs3142530
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214978 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCCTCACGGA GCCCAGCTCC
  ACAGGGAAGC GGGGAGCCTG TGAATGCATC TGCAGCCCGC TTAGAGCCTG TCAGCTCCTG
  GAATGGGGTA CACTCCTGAG GGGAGGGCGG GGATAAAGGA CAATAGGGCT AGCTAAGGAG
  CAGTCTACTT GAGAAGGGAA TTTGGGAGAT TTCTGATGGG AAATCTACCG TCTGGTAGGC
  S
  GGGCCAGGGA GCTGCACACC ATTAGACCAG GAGCCCGAGG GATCAGAAGT GATAAGTGGG
  AGGTTTAGGG CAAGGGCGGG CATTTCAAGG AAAATTTAAG GGCTTTGGGC AGAATCTGAG
  CCCGGGTAAG GCTCTGAAGT ATCAAAAGGC TAGGAGGCCC GGAAGGCTGG TGGGGTCTGC
  GGGCTGGGAA CATCTTAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148681252	ENSMUSSNP2163551	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	G	G
ss322134964	CHEV_7_31300572	CHEVERUD	SCREENING_POP	r	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3142530					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214978 () rs orientation: reverse

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	within coordinates
Tssr2186	transcription start site region 2186	317 bp downstream
Tssr65778	transcription start site region 65778	397 bp downstream