rs3142531 SNP Detail

Summary

• ID
  rs3142531
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214599 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGGG CGCTAGTGTG ACTGTCACGT
  G
  ACCGTGATCC AGCCACGGCT GTCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148681230	ENSMUSSNP4694784	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C	C
ss322134960	CHEV_7_31300193	CHEVERUD	SCREENING_POP	r	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3142531					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214599 () rs orientation: reverse

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	within coordinates
Prodh2	proline dehydrogenase (oxidase) 2	1772 bp downstream
Tssr2186	transcription start site region 2186	55 bp upstream
Tssr65778	transcription start site region 65778	18 bp downstream