rs31425889 SNP Detail

Summary

• ID
  rs31425889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171015933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCTTCCG TTCCATCTTC TCTCCCTTTG CTGCTTTCCC
  CTTTAGTGGT GTTACCACAG CAACCATTGT CACCAGAAGA GGAAGACAGT GTTTCCCCCT
  Y
  CTCTTTTCCA AGCCGCAAGT CAAAACCAGT TTTGGGAAGG GTGAACTATT CAGCTCTCTG
  CACACTCTTC ACACCCCCGG GCTCTTTAAA GAGCGATCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45031456	mCV24421038	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss119995952	PARCsnp_1.12053	PARC_SEQ	INBRED	f	SNP		C	T
ss119997546	PARCsnp_1.01042	PARC_SEQ	INBRED	f	SNP		C	T
ss146156041	ENSMUSSNP4378429	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31425889					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171015933 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1297 bp upstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423235	regulatory region 423235	within coordinates
Rr423236	regulatory region 423236	807 bp proximal
Rr423237	regulatory region 423237	1308 bp proximal
Rr423238	regulatory region 423238	1961 bp proximal