rs31426156 SNP Detail

Summary

• ID
  rs31426156
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91178995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC CTTGGACACT CATGCTGTAC
  K
  GTTTAAGTCC CGATCTGTTT CTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45032319	mCV25408049	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss144943433	ENSMUSSNP5326690	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss319839836	CHEV_1_93147850	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31426156					SNP	G	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91178995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	182 bp distal
Rr366958	regulatory region 366958	1027 bp downstream
Rr415586	regulatory region 415586	1937 bp distal
Rr415587	regulatory region 415587	697 bp distal
Rr415588	regulatory region 415588	within coordinates
Rr415589	regulatory region 415589	590 bp proximal
Tssr8065	transcription start site region 8065	1057 bp downstream
Tssr8066	transcription start site region 8066	963 bp downstream
Tssr8067	transcription start site region 8067	893 bp downstream
Tssr8068	transcription start site region 8068	765 bp downstream
Tssr8069	transcription start site region 8069	687 bp downstream
Tssr12938	transcription start site region 12938	1198 bp upstream
Tssr12939	transcription start site region 12939	99 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates