rs31426442 SNP Detail

Summary

• ID
  rs31426442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25369158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTACATA TTAACCTTAG
  AATGGCCTTC ACAATGCAGA TGCTAGCACT CTCAATTCAG CTACAGGTTT TCATACTAAC
  TTTTGTTTTT TAAAACCTAT ACCCAAGATT TGGCATTTAA GAGGTCATTA ACTTTTCACA
  AGTCTAAATA TAATTATGGT ATGTATAGTC ATGTAGTTAT AATGAGTTAA CAGAATATGC
  R
  AACTAGGTCT CACTACAGAT AAGATAATCA GATTGTCATG CCTCTTCTGT TTATTATCTT
  TTTGTAATAT ATGTTGACAG TAATATTATC ATTGCGTGGG GCCAGATAAT TTTCAGAGGT
  TTTTCAGATT TTAGCCTATT TGCACAGGTT ATCAGCTGTA ACTAGTTAGT CTGAAATCTG
  AAGTGAGTGC TTCAAGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49238580	NES12661726	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A		A	A		A
ss325560755	CHEV_18_25394602	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31426442					SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49238580	NES12661726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25369158 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1542 bp downstream
Tssr150327	transcription start site region 150327	1806 bp downstream
Tssr150328	transcription start site region 150328	1785 bp downstream
Tssr150329	transcription start site region 150329	1782 bp downstream