rs31427078 SNP Detail

Summary

• ID
  rs31427078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44690914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTGCTGTGAG GGAAGAGAAC
  R
  GACAAGAAGA AGCTTGGCAT CAGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45032521	mCV23627167	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss50949668	NES13945441	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	G		G		G	A	G
ss149031200	ENSMUSSNP367640	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31427078					SNP	G	G	G	A	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50949668	NES13945441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44690914 () rs orientation: forward

Symbol	Name	Function Class
Gulp1	GULP, engulfment adaptor PTB domain containing 1	within coordinates
Tssr6574	transcription start site region 6574	698 bp upstream