rs31427404 SNP Detail

Summary

• ID
  rs31427404
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25369135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTGATC AAGAATAACT
  TTTTCTTTAC ATATTAACCT TAGAATGGCC TTCACAATGC AGATGCTAGC ACTCTCAATT
  CAGCTACAGG TTTTCATACT AACTTTTGTT TTTTAAAACC TATACCCAAG ATTTGGCATT
  TAAGAGGTCA TTAACTTTTC ACAAGTCTAA ATATAATTAT GGTATGTATA GTCATGTAGT
  K
  ATAATGAGTT AACAGAATAT GCAAACTAGG TCTCACTACA GATAAGATAA TCAGATTGTC
  ATGCCTCTTC TGTTTATTAT CTTTTTGTAA TATATGTTGA CAGTAATATT ATCATTGCGT
  GGGGCCAGAT AATTTTCAGA GGTTTTTCAG ATTTTAGCCT ATTTGCACAG GTTATCAGCT
  GTAACTAGTT AGTCTGAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49238582	NES12661725	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31427404					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49238582	NES12661725	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25369135 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1519 bp downstream
Tssr150327	transcription start site region 150327	1783 bp downstream
Tssr150328	transcription start site region 150328	1762 bp downstream
Tssr150329	transcription start site region 150329	1759 bp downstream