rs31427410 SNP Detail

Summary

• ID
  rs31427410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:25368822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTCCA CATACAAATG
  CAGTAAAGTG AACTTGAAAC CAAACTTAGT GTGTGTTTAT AATATGCTAT ATATTTTATA
  CACACTTCTA TACTTCTTTA TAGTGATAGT TCTGATTATG TTGTATCAAA TCTATATAGG
  GCCATATAAA AATTACTTAG AAAGTTTAAT CAGTTCTTGC ATATGTAAAC ATACTTTAAT
  R
  CTGCCTATCT TCTATCTAAA GGATTATTCT GAAATACCTC TTCATCTAAG CCCCTTTGTA
  GTAGCACAGT TTGTAATGAT TTTCAGATTT GAAGAATATA ATGAATGGCT GTGTTATTGA
  TCAAGAATAA CTTTTTCTTT ACATATTAAC CTTAGAATGG CCTTCACAAT GCAGATGCTA
  GCACTCTCAA TTCAGCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49238588	NES12661721	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss146861022	ENSMUSSNP5179031	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss325560754	CHEV_18_25394266	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31427410					SNP	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49238588	NES12661721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25368822 () rs orientation: forward

Symbol	Name	Function Class
AW554918	expressed sequence AW554918	within coordinates
Gm58918	predicted gene, 58918	1206 bp downstream
Tssr150327	transcription start site region 150327	1470 bp downstream
Tssr150328	transcription start site region 150328	1449 bp downstream
Tssr150329	transcription start site region 150329	1446 bp downstream