rs31427420 SNP Detail

Summary

• ID
  rs31427420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA GTGAGCTCCT CCCCGGCCTG
  W
  GGAAGCCTAA AGTAAAGCTG ATGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45032627	mCV23354945	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	A
ss145478727	ENSMUSSNP3564194	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss319974406	CHEV_1_133424126	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31427420					SNP	A	A	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	354 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	within coordinates
Rr396287	regulatory region 396287	44 bp upstream
Rr418129	regulatory region 418129	915 bp distal
Rr418130	regulatory region 418130	1300 bp distal
Rr418131	regulatory region 418131	213 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	585 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	197 bp upstream
Tssr8629	transcription start site region 8629	309 bp upstream
Tssr8630	transcription start site region 8630	352 bp upstream
Tssr8631	transcription start site region 8631	431 bp upstream
Tssr8632	transcription start site region 8632	812 bp upstream
Tssr13595	transcription start site region 13595	1964 bp upstream
Tssr13596	transcription start site region 13596	1931 bp upstream
Tssr13597	transcription start site region 13597	1702 bp upstream
Tssr13598	transcription start site region 13598	1001 bp upstream
Tssr13599	transcription start site region 13599	959 bp upstream
Tssr13600	transcription start site region 13600	804 bp upstream
Tssr13601	transcription start site region 13601	256 bp upstream
Tssr13602	transcription start site region 13602	164 bp upstream
Tssr13603	transcription start site region 13603	9 bp upstream