rs31427695 SNP Detail

Summary

• ID
  rs31427695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45433818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TCCTCATAAT CACGTCTAAA
  R
  AGTGTGTCCA TTCATGCTGT CTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46031896	mCV24380727	ABI	CRAMUS_MOUSE	f	SNP	A	G	G		G	A
ss61002954	NES16124230	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		A	G	A	G	A	G
ss149145018	ENSMUSSNP7146091	ENSEMBL	ENSEMBL_Sanger	f	SNP			G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31427695					SNP	A	G	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002954	NES16124230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45433818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19088	CpG island 19088			225 bp distal
Cpgi19089	CpG island 19089			989 bp proximal
Lmtk3	lemur tyrosine kinase 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646575	regulatory region 646575			437 bp distal
Rr646576	regulatory region 646576			within coordinates
Rr646577	regulatory region 646577			265 bp proximal
Tssr66636	transcription start site region 66636			662 bp downstream
Tssr66637	transcription start site region 66637			450 bp downstream
Tssr66638	transcription start site region 66638			937 bp upstream
Tssr66639	transcription start site region 66639			1176 bp upstream
Tssr72472	transcription start site region 72472			632 bp downstream