rs31427936 SNP Detail

Summary

• ID
  rs31427936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:78168492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAGGTGAA GACTTTAATG TTTATGATGG AAAGCCCTAG
  TGTCTTTAAA GAACAAAGTT TCATCTTCCC ACCCATCAGT TAGCTTTTAA AGTGACCACC
  R
  CTCTTAGACA ACTTTTGAAG ATGACCGGCT ATATTCCAAT GTCCAGGTGT ATAAAAAACT
  CAAGTCACAC TGCTGGGTTC CCATGCAGTT AACTAGTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39287610	mCV25278348	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss139789214	ENSMUSSNP4016218	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss324674266	CHEV_14_78330859	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31427936					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:78168492 () rs orientation: forward

Symbol	Name	Function Class
Epsti1	epithelial stromal interaction 1	within coordinates
Rr290670	regulatory region 290670	892 bp distal
Rr296384	regulatory region 296384	1421 bp distal
Rr300474	regulatory region 300474	909 bp proximal
Rr389888	regulatory region 389888	1731 bp upstream
Tssr126764	transcription start site region 126764	188 bp upstream