rs31428266 SNP Detail

Summary

• ID
  rs31428266
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:25367521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATCCTA TAGAGCTGAG
  ATTCCTGTGC TTGCCTGCCT ACAAGTTTAG AGGACACAGT CAGAAGGCTC CTTGTAAAGA
  CAGCTCATGA GTAACCTGAA CTGGCTGGAA GGTCTGGTCC AGAACTGTGA GCAAGTCAGT
  TGTTGCTTAA GCTTCCTCAG CTCTAAACCT TGGCCATGAA AGGAGGAGTG AGGTGGGATG
  S
  TGTTAAATGG TGCCCCATTC TCTGCTGGTT TTTCTCAGTA TAAGCTAAAA GAGCCAATTG
  ATATATTTGT CTAAAAGTTG TACTTCTAAA CTTTATCTTG CTTCCTGGTG TCATTGTCTG
  TCATATTCTG TATCTTTACT GCCCTAGCTA GGTATTAATA CAATTTTGGA CATAACTTAT
  TCTAGGTTTG GTTTTAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49238594	NES12661756	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31428266					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49238594	NES12661756	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:25367521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AW554918	expressed sequence AW554918			Intron
				Noncoding-Transcript-Variant
Gm58918	predicted gene, 58918			within coordinates
Tssr150327	transcription start site region 150327			169 bp downstream
Tssr150328	transcription start site region 150328			148 bp downstream
Tssr150329	transcription start site region 150329			145 bp downstream