rs31428432 SNP Detail

Summary

• ID
  rs31428432
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135693210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA GGCATGGTTG GGCTCCAAGT
  M
  AATGCTCTGT GAGACAACCC CACAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45032746	mCV23239872	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss319993135	CHEV_1_137662049	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31428432					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135693210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	67 bp proximal
Gm70736	predicted gene, 70736	477 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	647 bp upstream
Rr372092	regulatory region 372092	within coordinates
Tssr223	transcription start site region 223	598 bp upstream
Tssr224	transcription start site region 224	717 bp upstream
Tssr8974	transcription start site region 8974	613 bp upstream
Tssr8975	transcription start site region 8975	735 bp upstream
Tssr8976	transcription start site region 8976	746 bp upstream
Tssr8977	transcription start site region 8977	765 bp upstream
Tssr8978	transcription start site region 8978	769 bp upstream