rs3142919 SNP Detail

Summary

• ID
  rs3142919
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70911357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA ACATTGGAAC TTTTCTCAAA
  M
  CTGGAAGTTT GGATGTAGGT ATTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38795419	mCV24105065	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	C
ss132379952	ENSMUSSNP4241887	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		C
ss323738913	CHEV_11_70834033	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3142919					SNP	C	C	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70911357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	425 bp distal
Derl2	Der1-like domain family, member 2	690 bp upstream
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	565 bp downstream
Rr402697	regulatory region 402697	1025 bp downstream
Rr450471	regulatory region 450471	910 bp distal
Rr450472	regulatory region 450472	701 bp distal
Rr450473	regulatory region 450473	260 bp distal
Tssr102806	transcription start site region 102806	952 bp downstream
Tssr102807	transcription start site region 102807	914 bp downstream
Tssr102808	transcription start site region 102808	893 bp downstream
Tssr102809	transcription start site region 102809	878 bp downstream
Tssr102810	transcription start site region 102810	643 bp downstream
Tssr102811	transcription start site region 102811	593 bp downstream
Tssr109053	transcription start site region 109053	1264 bp upstream
Tssr109054	transcription start site region 109054	1241 bp upstream