rs3142962 SNP Detail

Summary

• ID
  rs3142962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102827823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT TTAAAGCACT CACGTTTATG
  R
  AAAATCTAGT GAAGCCATCA GGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37575061	NES09070848	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A		G	G	A	A		G	A	A		A
ss45280210	mCV23736210	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss147128941	ENSMUSSNP2087786	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320441442	CHEV_2_102837635	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3142962					SNP	A	A	A	G	A	A	G	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37575061	NES09070848	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102827823 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	1106 bp upstream
Rr561777	regulatory region 561777	488 bp proximal
Rr561778	regulatory region 561778	829 bp proximal
Rr561779	regulatory region 561779	1117 bp proximal
Rr561780	regulatory region 561780	1463 bp proximal
Tssr19143	transcription start site region 19143	1099 bp upstream
Tssr19144	transcription start site region 19144	1115 bp upstream