rs3142963 SNP Detail

Summary

• ID
  rs3142963
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102828081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAACTAT CCTTATTTCT
  GTATCTTCTC TCCTTCCTAG CCTCATTTTT TATTCATCAT TAAAGCATAT TGCTTTTGAG
  AGAGCATACT TTTTAAATTC AGGAGCTCTC AACAATAGTT ACACTTTAAA TATCATATAT
  GGCATTTACA GATATTTGca cacacacaca cacacacaca cacacacaca cacacacaca
  C
  aGTCTCATTC ATCCAAGGCT TTCTAGATCT CTGGGACTGA TGAGGTATGG GGTGAGCGGT
  GGTAGGGAAT ACCTACTGTT TTACCAAGGC AGGTTTATAA ACCTAGGGTT GAGAACCACA
  TTGGATAAAC TACTTGTGGG ATCTTCAGAT TTATATCTGG AGATTAAGTG GGAAATCTTC
  TGTTTAAAAG GAGTAACTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147128944	ENSMUSSNP4870579	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320441443	CHEV_2_102837893	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3142963					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102828081 () rs orientation: forward

Symbol	Name	Function Class
Gm74679	predicted gene, 74679	848 bp upstream
Tssr19143	transcription start site region 19143	841 bp upstream
Tssr19144	transcription start site region 19144	857 bp upstream