rs31429712 SNP Detail

Summary

• ID
  rs31429712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39597103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATCAGAAT CTATTGGGTA TAGTATGTGT
  AAAATGTGTC TCTGAAGCCA GAAGATATAG GTGGCACCTC TATTTACTTC ATACATTCTA
  TGATTCAATT TACATAAAAC CAAACATGCA AGCATCTGCA CTCATGCACA AACCCATGCA
  Y
  GCATAAGCAC ACACACACAC AGAGGATGCT ACCATATGCA GAGCTATACT TCGGAATTAC
  AGATTGGGGA AGATGTTCAT AGGCTATATA GTATTCTGTC ATAAACTCAG TTCACGGATT
  TATGTGGACT ATTCTACATA TTCATTTTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45032371	mCV25395735	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148969061	ENSMUSSNP3347125	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss319695772	CHEV_1_39614867	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31429712					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39597103 () rs orientation: forward

Symbol	Name	Function Class
Rnf149	ring finger protein 149	within coordinates
Rr409899	regulatory region 409899	1652 bp distal
Rr409900	regulatory region 409900	1051 bp proximal
Tssr11386	transcription start site region 11386	2000 bp upstream
Tssr11387	transcription start site region 11387	193 bp upstream
Tssr11388	transcription start site region 11388	279 bp downstream
Tssr11389	transcription start site region 11389	340 bp downstream
Tssr11390	transcription start site region 11390	909 bp downstream
Tssr11391	transcription start site region 11391	939 bp downstream