rs31429724 SNP Detail

Summary

• ID
  rs31429724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115631279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAC CCGCGCGAGC CTTACGGGGC
  Y
  GTCCCTCGCC CACGCCGTCA GCGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46031259	mCV22732257	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss145720547	ENSMUSSNP4372929	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31429724					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115631279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19603	CpG island 19603	within coordinates
Cpgi19604	CpG island 19604	1420 bp proximal
Rr654127	regulatory region 654127	1008 bp distal
Rr654128	regulatory region 654128	212 bp distal
Rr654129	regulatory region 654129	1054 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Sox6os	SRY (sex determining region Y)-box 6, opposite strand	within coordinates
Tssr68686	transcription start site region 68686	112 bp downstream
Tssr68687	transcription start site region 68687	35 bp downstream
Tssr74377	transcription start site region 74377	1044 bp upstream
Tssr74378	transcription start site region 74378	922 bp upstream
Tssr74379	transcription start site region 74379	1562 bp downstream
Tssr74380	transcription start site region 74380	1767 bp downstream
Tssr74381	transcription start site region 74381	1819 bp downstream