rs31430873 SNP Detail

Summary

• ID
  rs31430873
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:181669027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTACCCT CAACCACATA
  CCGCAGAAAT TCAAGAATCC TCAGGCTTTT TTCCTGTCAA CCCAGATTCT TGCTAACCCG
  AGGGTCATTT GGCACTGAAC GCCTCACATA TTATGGTACA ATATAACACT ATGTATCAGT
  GTGGCCGATT TCTTTCTACG ATGCTCCGGT GCGTTACTAA GATCTTTAAT CGTTTCCCCC
  M
  CTCTCCCAAA TTCACTTAAT GTGGCAGAAA GAAAAAGCTC AAATGGTGGC TCACAGCTAC
  CCTTTAACAC CTGAGCCGGC ACAGGCCTGC TAGGCAAAAC GCAAACAGGA AGGCGTTCGC
  AGGGTCTGTG CCCCTTCAGA GCCGTGCAGG AGAAAGCTGG CTGTCCTGGC AGAGTGGCCT
  TTTCCCTTAA TACCCAAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45033254	mCV23624136	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss146399297	ENSMUSSNP2438713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31430873					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181669027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	30 bp proximal
Gm55354	predicted gene, 55354	894 bp upstream
Lbr	lamin B receptor	Intron
Rr396678	regulatory region 396678	759 bp upstream
Rr424801	regulatory region 424801	1206 bp distal
Rr424802	regulatory region 424802	848 bp distal
Rr424803	regulatory region 424803	within coordinates
Rr424804	regulatory region 424804	907 bp proximal
Rr424805	regulatory region 424805	1104 bp proximal
Tssr10531	transcription start site region 10531	1053 bp upstream
Tssr10532	transcription start site region 10532	1089 bp upstream
Tssr15588	transcription start site region 15588	442 bp upstream
Tssr15589	transcription start site region 15589	845 bp downstream
Tssr15590	transcription start site region 15590	872 bp downstream
Tssr15591	transcription start site region 15591	1572 bp downstream