rs31431160 SNP Detail

Summary

• ID
  rs31431160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88622828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG GCATAAGCTA TCTGCTTTTT
  W
  AAAAGGTGTA TTTATTCATA TGTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45532866	mCV23478978	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss135471514	ENSMUSSNP404778	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320836101	CHEV_3_88519443	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31431160					SNP	A	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88622828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1223 bp proximal
Rit1	Ras-like without CAAX 1	1326 bp upstream
Rr397776	regulatory region 397776	1115 bp upstream
Rr579875	regulatory region 579875	911 bp proximal
Tssr30018	transcription start site region 30018	1317 bp upstream
Tssr30019	transcription start site region 30019	1363 bp upstream
Tssr30020	transcription start site region 30020	1395 bp upstream