rs31431721 SNP Detail

Summary

• ID
  rs31431721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190797049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTG CCCATTGACA ACAGTTTCAA
  W
  CAATCTCGTA TTTTAAGTCC TCCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45032681	mCV23580224	ABI	CRAMUS_MOUSE	f	SNP	T	T				A
ss51423904	NES14444320	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		A	A	T	A	A	A	A	A	T
ss146501368	ENSMUSSNP5549252	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31431721					SNP	T	T	T	T	T	A	A	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51423904	NES14444320	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190797049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	1339 bp distal
Nsl1	NSL1, MIS12 kinetochore complex component	within coordinates
Rr29190	regulatory region 29190	448 bp distal
Rr396711	regulatory region 396711	1679 bp downstream
Tatdn3	TatD DNase domain containing 3	1920 bp upstream
Tssr10722	transcription start site region 10722	1814 bp downstream
Tssr15751	transcription start site region 15751	1965 bp upstream
Tssr15752	transcription start site region 15752	1941 bp upstream