rs31431879 SNP Detail

Summary

• ID
  rs31431879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151995274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTCTG GAGGTCCTGA
  GTTCAAATCC CAGCAACCAC ATAATGAGAT CTGGTGCCCT CTTCTGGTGT GTCTGAAGTC
  AGTCACAGTG TACTTATGTA TAATAATAAA TAAATCTTTG GGCCAGAGCA AGCAGGGACT
  GAGCGAGCGG AGTTGATTGG AGCAAGCAGG GCCGACCTGA ACGAGCAGAG GTCCTAAAAA
  Y
  TCAATTCCCA ACATCCACAT GAAGGCTCAC AACCACCTGT ACAGCTATAG TGTATTCACA
  TACATTAAAT AAATAAATAA ATAAATCTAA AAAAAAAAAA AAACTTAAGA AAAAAAAGAG
  CATGCTCGGT ACTTTCAGAG GACCCAAGTT TGGTTCCCAG CATCCGTGTT GGATAGCTCA
  CAAGCCAGCT CCATGGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45533405	mCV24027905	ABI	CRAMUS_MOUSE	f	SNP	T		C
ss136101771	ENSMUSSNP1408598	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321028596	CHEV_3_151952601	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31431879					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151995274 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	1583 bp distal
Rr587516	regulatory region 587516	595 bp distal
Tssr32405	transcription start site region 32405	689 bp upstream