rs31433418 SNP Detail

Summary

• ID
  rs31433418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182782473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG AGCCTTGTAG TTGCAAGGGG
  Y
  CCAGCAGGGG GTTCCCTGAG ACCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45033279	mCV24863626	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss146408579	ENSMUSSNP6805292	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31433418					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182782473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	within coordinates
Gm69962	predicted gene, 69962	1158 bp upstream
Tlr5	toll-like receptor 5	within coordinates
Tssr10570	transcription start site region 10570	80 bp downstream