rs31433865 SNP Detail

Summary

• ID
  rs31433865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG GGAAGACCGT TGAGTCCGGC
  W
  AGCTAGCAGG TAGCTATAGC CTACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46031482	mCV23532820	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss148400026	ENSMUSSNP1322425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31433865					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	1327 bp proximal
Gm71929	predicted gene, 71929	359 bp downstream
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	276 bp downstream
Rr642821	regulatory region 642821	1564 bp distal
Rr642822	regulatory region 642822	241 bp distal
Rr642823	regulatory region 642823	307 bp distal
Rr642824	regulatory region 642824	710 bp proximal
Tssr64660	transcription start site region 64660	213 bp downstream
Tssr64661	transcription start site region 64661	761 bp upstream
Tssr70792	transcription start site region 70792	716 bp downstream