rs31434562 SNP Detail

Summary

• ID
  rs31434562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94443691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT TAAACTATAC ATAGTTCTGT
  R
  TCCTATAAAA GTATCTTTCA GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45533943	mCV23091874	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135505864	ENSMUSSNP3426261	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320840305	CHEV_3_94340306	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31434562					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94443691 () rs orientation: forward

Symbol	Name	Function Class
Gm43773	predicted gene 43773	418 bp upstream
Gm43774	predicted gene 43774	227 bp downstream
Rr375397	regulatory region 375397	within coordinates
Rr580647	regulatory region 580647	1962 bp distal
Snx27	sorting nexin family member 27	Intron