rs31435264 SNP Detail

Summary

• ID
  rs31435264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115475966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAGGCCCTA GGTTCCATTC TCAGTACTAG AAACAAAATA AAACAAAACA AAAACAAACA
  AACAACAAAA AAAGCAAGCT AACGAAATGG GAAAAGAGAA AAGAAATGAA GTGGGAGAGG
  GAGATAGGGA GGAAAAGGGA AGAGAAGAGG CGAAAGAGAG GGTAGGAAAA GAAGGAAAGA
  AGAAGCAGGA AGGAGAGGAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA
  GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA GGAAAGGAAA
  R
  GAAGAAAAGA GAGGGAAGAA AGGAAGAGTC GCTGTAAGCT GCGAATGATG AACCCCTCCA
  GCAGTTGGGA GATGCACACC TCATACTGAA AAGAACGTCT GGGTGATATG CGGGGTCACC
  ACCAGGAGCA TTCAGCTCAT AGATGGTAAT TCAAAGCATG GATATGAATG TGATTACTAA
  GAAGAAAATG CAGACAGTAG GGAAAAGAGG AAGTAGGGTG CCAGGGGGTG CATGCTTGTA
  GTCTCAGTTA GTTGAGAGCC TGCGACTCTC ATGTGAGCCT AAGAGTTTGA GGCCAGACTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45534795	mCV23909428	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135664070	ENSMUSSNP3656214	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31435264					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115475966 () rs orientation: forward

Symbol	Name	Function Class
Gm64341	predicted gene, 64341	194 bp downstream
Rr397954	regulatory region 397954	849 bp downstream
Rr583574	regulatory region 583574	786 bp distal
Rr583575	regulatory region 583575	37 bp proximal
Tssr31331	transcription start site region 31331	826 bp upstream
Tssr35267	transcription start site region 35267	364 bp downstream