rs31435482 SNP Detail

Summary

• ID
  rs31435482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT TTTCTAGCGT CGTGTAGACT
  Y
  TTACAATCTT AGAATGTCAC TTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45535495	mCV24054451	ABI	CRAMUS_MOUSE	f	SNP		C	T			C		C
ss60445528	NES15941781	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		T	C	C	C		T	C	C	T		C
ss135766567	ENSMUSSNP7121259	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss320920396	CHEV_3_123210843	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31435482					SNP	C	C	T	C	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445528	NES15941781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	13 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1328 bp downstream
Rr397991	regulatory region 397991	891 bp downstream
Rr584523	regulatory region 584523	1006 bp distal
Rr584524	regulatory region 584524	871 bp distal
Rr584525	regulatory region 584525	449 bp proximal
Rr584526	regulatory region 584526	994 bp proximal
Rr584527	regulatory region 584527	1385 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	12 bp downstream
Tssr31551	transcription start site region 31551	625 bp upstream
Tssr31552	transcription start site region 31552	663 bp upstream
Tssr35502	transcription start site region 35502	405 bp downstream
Tssr35503	transcription start site region 35503	990 bp downstream