rs31435547 SNP Detail

Summary

• ID
  rs31435547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8618558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAGAACTT
  CACAAAAAAC AACAACAAAA AAGTTTACTG TTTTATTTAT TATCTACAGA GTTGAAAAAT
  TCTCAGTAGA TATCTGTACC AGCTAGCTGG CTAAAAGAAT GTCATAACCC ATGTCAAGGA
  TTTATTAAAA TCTAGAGTGT TAAATCCATC AGGACATGGA AATTGAGGTT CCAGATTCAT
  R
  AGTTCTTTAT TCCTAATCTC TGTTATCAAA ACTGATCTAT AGCTGCCATT TTACCATCCT
  TTTCAGAACT AAGAATGAGG TTAACTAAGT AAAGTCGCTT AGAAGCACAG GGCAGCCTCT
  CTTGGAGATG GGAAAGTTCT ACAGCTTGCC ACAAATGAAG TACCTGAAAA GTCTTATGAC
  AACTAAACAA CAAAATTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47552337	NES10306867	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	G		A
ss321463559	CHEV_5_8568558	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31435547					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552337	NES10306867	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8618558 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	958 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1448 bp downstream
Tssr45119	transcription start site region 45119	1435 bp downstream