rs31435550 SNP Detail

Summary

• ID
  rs31435550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8618154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATTTCT TCTTATAATT
  AAGTTTGTCT CTCTGTGGTG ATAAAATTTC ATTTTGTCAG GTTCATTTTA AAGGTCTATG
  AGTTTATCAT CTCACTACCC ATCTTTAGGT ATTTCCTAAG AGTATCAAGT TGCTAAAAAT
  CTCAATAATT ACATACTATA TTTATCTTAT TAAAACACTT TTGTAGCTAA AAGTCTTTTC
  Y
  GGATCAAATT TATTATCATA ATATTTTTTT GTATCTGTCA AATTAAAAGT TTACTGTTGC
  CAGGCGTGGT GGCACACGCC TTTAATCCCA GCACTTGGGA GGCAGAAGCA GGTGGATTTC
  TGAGTTCGAG TCCAGCCTGA GCTACAAAGT GAGTTCCAGG ATAGCCAGGG CTACACAGAG
  AAACCCTGTC TCAAAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47552340	NES10306945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31435550					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552340	NES10306945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8618154 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	554 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1044 bp downstream
Tssr45119	transcription start site region 45119	1031 bp downstream