rs31436284 SNP Detail

Summary

• ID
  rs31436284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161077315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG TCTGGCTGGC ATGCTTATTT
  Y
  TAGACTTTTC TCCTGCAAGG CCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45033785	mCV24544950	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31436284					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161077315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	764 bp proximal
Gm70781	predicted gene, 70781	993 bp upstream
Prdx6	peroxiredoxin 6	within coordinates
Rr372334	regulatory region 372334	within coordinates
Rr396460	regulatory region 396460	1304 bp upstream
Rr396461	regulatory region 396461	1765 bp upstream
Rr421775	regulatory region 421775	1200 bp distal
Rr421776	regulatory region 421776	507 bp proximal
Rr421777	regulatory region 421777	1388 bp proximal
Rr421778	regulatory region 421778	1411 bp proximal
Tssr14577	transcription start site region 14577	1139 bp downstream
Tssr14578	transcription start site region 14578	1383 bp downstream
Tssr14579	transcription start site region 14579	1396 bp downstream
Tssr14580	transcription start site region 14580	1408 bp downstream
Tssr14581	transcription start site region 14581	1757 bp downstream