rs31436382 SNP Detail

Summary

• ID
  rs31436382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8617452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTATTC TTATACTTTA
  CAAATTTACT CTTCCAAATG TGTTTGTTTA GCCAGAGGTT TACATTCAAA TTACTTATAA
  TGAAAGAGTT ATTTGAATTT ATTTAAGTAA AAATAACAAA ATTAAGTAGT TAAAAACGTT
  CTGAGTTTCC ACATTTGTTA GTCACAATCT AAGAAGAAAA TTCTGAAATA TCTTTGTGCT
  Y
  ACTTTCCTTC ATGTGAATCA TGAAGCCACT GCATTCACAT TCAAGCACCT TCGTTAGGGC
  AGCCATGTTT ATGTATACTA TATCCATGTA TGCATATAAT ATGCACGAAG CCACGTTTGT
  GTATGGATAT CATATGTTTA TGTATATTAC AAGCCTTTTA TTTTGGAAAC TTTTGTGTTT
  AGAACTGAAT CATTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47552352	NES10306941	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C		T
ss321463546	CHEV_5_8567452	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31436382					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552352	NES10306941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8617452 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	within coordinates
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	342 bp downstream
Tssr45119	transcription start site region 45119	329 bp downstream