rs31436515 SNP Detail

Summary

• ID
  rs31436515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129052096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACCTAGG GCTATATAGA AAGAAACTCT GTTTCAAAAA
  CAAAATACCT ACAGTTTCAT AGATGACTCA GGGCCTGCTT AGTGTCCCAT CCTTCTAGGC
  Y
  TGGATCCTGA AACACTGATG AGGGGCAATG AGATAGCAAA GAAAGGAAGA AAACCCAGAT
  GGCCTTACAA TGGGGCTGGG ATCAGACTGG GTTCTCCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45533360	mCV23445902	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51624473	NES14657221	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		C	C	T	T		C		T	C	C		C
ss135885305	ENSMUSSNP6598803	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C					C
ss320961812	CHEV_3_128961365	CHEVERUD	SCREENING_POP	f	SNP													T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31436515					SNP	T	T	T	T	T	T	C	T	C	C	T	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624473	NES14657221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129052096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13813	CpG island 13813	1750 bp distal
Gm65501	predicted gene, 65501	within coordinates
Rr584978	regulatory region 584978	1300 bp distal
Rr584979	regulatory region 584979	1389 bp distal
Rr584980	regulatory region 584980	219 bp proximal
Rr584981	regulatory region 584981	279 bp proximal