rs3143673 SNP Detail

Summary

• ID
  rs3143673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93888044 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTCC TTCCGCGGCG CTGGCTTTCC
  R
  AGAGGCCTGC TCTGCACTAC CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39469560	mCV25392280	ABI	CRAMUS_MOUSE	r	SNP	T	T	C	C
ss148576897	ENSMUSSNP2517995	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3143673					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93888044 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	938 bp distal
Cpgi8494	CpG island 8494	within coordinates
Rr520044	regulatory region 520044	1593 bp distal
Rr520045	regulatory region 520045	within coordinates
Rr520046	regulatory region 520046	499 bp proximal
Rr520047	regulatory region 520047	1812 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139540	transcription start site region 139540	1935 bp downstream