rs31437712 SNP Detail

Summary

• ID
  rs31437712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76192620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AGAAGTACTT CTACTAATCG
  Y
  ATGCGTCTGT CTAAAAGGTA AATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49238997	NES12512877	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	T	C	T		T	C	C	C
ss139753359	ENSMUSSNP6224002	ENSEMBL	ENSEMBL_Sanger	f	SNP		C										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31437712					SNP	T	C	C	C	C	C	T	C	T	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49238997	NES12512877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76192620 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f2	general transcription factor IIF, polypeptide 2	within coordinates
Kctd4	potassium channel tetramerisation domain containing 4	within coordinates
Rr290554	regulatory region 290554	1381 bp proximal
Rr296312	regulatory region 296312	219 bp distal
Rr389861	regulatory region 389861	within coordinates
Tssr126694	transcription start site region 126694	164 bp downstream
Tssr126695	transcription start site region 126695	117 bp downstream