rs31437803 SNP Detail

Summary

• ID
  rs31437803
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51322395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC CCTTTTTGGT TTTTAAGAGA
  K
  CGAATTCCAG GATAGCCAGG GAAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45533476	mCV22575729	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss135173253	ENSMUSSNP3420909	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			T
ss320762671	CHEV_3_51218896	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31437803					SNP	G	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51322395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13139	CpG island 13139	680 bp proximal
Gm50622	predicted gene, 50622	1409 bp upstream
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	1042 bp upstream
Rr397658	regulatory region 397658	859 bp upstream
Rr576314	regulatory region 576314	1134 bp distal
Rr576315	regulatory region 576315	552 bp proximal
Rr576316	regulatory region 576316	1053 bp proximal
Tssr29053	transcription start site region 29053	988 bp upstream
Tssr29054	transcription start site region 29054	1012 bp upstream
Tssr29055	transcription start site region 29055	1627 bp upstream