rs31437940 SNP Detail

Summary

• ID
  rs31437940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8616156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTTTCA ACATGCTCTG
  AGATTCTCCA GACATAAGGC TATCATAACC TCAGGAGCAG CTGCCATGCT ATTCTATGCT
  TCCCCTATAC ATTCATGCTA TGATAAAGAT TAACATAAAT AAGCCACATG GAGAGATTAA
  CAGTAACAAC TGATTAAAGC AGGTATTAGC AACCGCGTGT AAAAACAGTT GTATAAAATG
  Y
  ATGAGTTACT CCTGGAATTT CCCAGTCAAT GAGTAACAGA AGTCTTAGAA AGCAAATTAA
  TAGATATCAA AGGATAATTT TAATGTAAGC ATTTACCATA TTTATAGATT TAAAAACTCT
  TGGTTCTTAA AAGATTTAGC AAGATTTAGA TTCTAGCTAC TTTTCTAAAA TTGGGAGCTA
  CATCTTAAGT GATAGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47552370	NES10306935	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	C		T
ss321463532	CHEV_5_8566156	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31437940					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552370	NES10306935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8616156 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	897 bp upstream
Rr130297	regulatory region 130297	1245 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	937 bp upstream
Tssr45119	transcription start site region 45119	957 bp upstream