rs31437943 SNP Detail

Summary

• ID
  rs31437943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTGTAT TTAAATCAGA
  TCTACTTGGA GTTTTTGTTA AGTCATGAAG TAGGACAATT CAAAAGCGAG TTTTATTAAT
  TTTTTTCATC ATAATACAGA AGCTTACCTC ATCTATGAAG AACATCCCAA CAAACCCACT
  GAATGTCTGG AACTGTAAGA TCTATACTTG CAGTCAATAT ACAAGTACAG CTTCCAATTT
  Y
  TGACCTAAAG GTACTGAGAA AACAGTAGTT CTTCAACAGC AATTGTGCTT CATAGTTGCA
  TTTTCATCTT CCTCAGGGTA GGAGCAGGGC AATGGCAGTG AGCTGTCACT ACAGTTAGCC
  AGTCTGTCAT CACATGGTTA CTATATATAA AAACAGACTT GCTGTTGTAC TTGCCCAACC
  ATGGGCTTTC CTAAGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47552373	NES10306954	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31437943					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552373	NES10306954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615685 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1368 bp upstream
Rr130297	regulatory region 130297	1716 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1408 bp upstream
Tssr45119	transcription start site region 45119	1428 bp upstream