rs3143818 SNP Detail

Summary

• ID
  rs3143818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103134067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG TCCATTCTGT CTGTCTCTGG
  R
  CATCATGACC AACTCTTTGT AGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45292558	mCV22830068	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147131925	ENSMUSSNP5064212	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320441772	CHEV_2_103143879	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3143818					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103134067 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	447 bp upstream
Gm74896	predicted gene, 74896	within coordinates
Rr55313	regulatory region 55313	466 bp distal
Tssr25460	transcription start site region 25460	551 bp upstream
Tssr25461	transcription start site region 25461	512 bp upstream