rs31438441 SNP Detail

Summary

• ID
  rs31438441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128532838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA TCAGGACATA AGAAGCATGA
  R
  CATTGCATGT CTAGCGTGTA GGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45033819	mCV23203767	ABI	CRAMUS_MOUSE	f	SNP	A	A					G	A
ss60796466	NES16465468	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A		G		A
ss145462677	ENSMUSSNP150420	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss319965283	CHEV_1_130501678	CHEVERUD	SCREENING_POP	f	SNP											A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31438441					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60796466	NES16465468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128532838 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	775 bp upstream
Rr396265	regulatory region 396265	912 bp upstream
Rr417789	regulatory region 417789	1761 bp distal
Rr417790	regulatory region 417790	688 bp proximal