rs31438462 SNP Detail

Summary

• ID
  rs31438462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86741862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT ACTCTAGAAA CTTCATGAAA
  Y
  TGTTGCCAAG GTAACTGGAG TAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45535729	mCV24929960	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135449560	ENSMUSSNP1337364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T		C
ss320829832	CHEV_3_86638477	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31438462					SNP	C	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86741862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579396	regulatory region 579396			887 bp distal
Rr579397	regulatory region 579397			793 bp proximal