rs31438620 SNP Detail

Summary

• ID
  rs31438620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76191532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGAAAC CCAAACTGAT
  CATTTAAATT AGAGCTTTAA TTTCCACAAG AAAGAGAAAG CAGACGGTCA ACTGGCCTCC
  ATCCTATACC CAAGCAAAGC TTTATCTTAG ATTACTAAAG AAACAGCTAA ACATGTTAAG
  TCCTAAGGTA AATTGTAGGA ATACTTATTA ATCTTGTTTT TGTTTTGTTT TGAGACAGGA
  Y
  GTACTATGTA GCCCTGAACT TGATAATGAA ATGATTTTTC TACCATCTGA TTTAACTGAA
  CAATTGGTCC TCCTGTATCA CCTATGATAT CGTATTGTAT AATGTGACTA TACTAAAACT
  ATACTATTAC AAAGCTGATT CAGAGAGCAC TGAATTAAAG AGAGAGAAAG AGAGAGAGAG
  ATTGATTATG TCCAGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49239007	NES12512870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31438620					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49239007	NES12512870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76191532 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f2	general transcription factor IIF, polypeptide 2	within coordinates
Kctd4	potassium channel tetramerisation domain containing 4	911 bp upstream
Rr296312	regulatory region 296312	703 bp proximal
Rr389861	regulatory region 389861	159 bp upstream
Tssr126694	transcription start site region 126694	919 bp upstream
Tssr126695	transcription start site region 126695	958 bp upstream