rs31438622 SNP Detail

Summary

• ID
  rs31438622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76190990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTATTT ATGGATATGT
  AAAACACTGG AAACAACACG TTTTTGATAA ATGTAAGGGA AAAAAGCTGA GCTTACAGGA
  CTCTCCCCAA ATAGTTTCCA GACCATACTC AGGTCTAATA GGATGGGAAA AAGGATACAC
  AGGCATATTC AATATAATGG AAGCACTGGA CATACCTCAT GTAATTTATT CCCAGATTAA
  Y
  ACAGGCGTCC ATTTCCCCAT TATTAAATAC AGTGACAGAT GCAATTATCT CACCATATAC
  TAGTGGGTAG TAGGTTAATC TCAAGTACTC CCACATACTT CTGCTCAAAC TTGTTGATAG
  TAATTATGTA ATTTGATTAC AAATTAGATA ACATTTTAAA TTAAAAGAAG GGCTGTGGTG
  CCTTAGGCTG TTTCTATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49239009	NES12512868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31438622					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49239009	NES12512868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76190990 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f2	general transcription factor IIF, polypeptide 2	within coordinates
Kctd4	potassium channel tetramerisation domain containing 4	1453 bp upstream
Rr296312	regulatory region 296312	1245 bp proximal
Rr389861	regulatory region 389861	701 bp upstream
Tssr126694	transcription start site region 126694	1461 bp upstream
Tssr126695	transcription start site region 126695	1500 bp upstream