rs31438826 SNP Detail

Summary

• ID
  rs31438826
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTCTACT GAAGGATCAA
  GTTATAAATA TTGATGTCCA ATTTATCTAT TTTTCTTTTG ATTATTGTAC ATAGGATATC
  ATGTCAAGGA AATACCAAAG AGCTAAACTT ATGTTTTCTT TCAATAATTT TGTATTTAAA
  TCAGATCTAC TTGGAGTTTT TGTTAAGTCA TGAAGTAGGA CAATTCAAAA GCGAGTTTTA
  Y
  TAATTTTTTT CATCATAATA CAGAAGCTTA CCTCATCTAT GAAGAACATC CCAACAAACC
  CACTGAATGT CTGGAACTGT AAGATCTATA CTTGCAGTCA ATATACAAGT ACAGCTTCCA
  ATTTTTGACC TAAAGGTACT GAGAAAACAG TAGTTCTTCA ACAGCAATTG TGCTTCATAG
  TTGCATTTTC ATCTTCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47552376	NES10306953	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31438826					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47552376	NES10306953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615560 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1493 bp upstream
Rr130297	regulatory region 130297	1841 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1533 bp upstream
Tssr45119	transcription start site region 45119	1553 bp upstream