rs31438990 SNP Detail

Summary

• ID
  rs31438990
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165590677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT GGCCACAGTT TTAAAACGAC
  S
  CAAACACGTT TGCATACATT TTCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45033546	mCV24495045	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss146006544	ENSMUSSNP1978797	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31438990					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165590677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	449 bp proximal
Creg1	cellular repressor of E1A-stimulated genes 1	650 bp upstream
Rr13809	regulatory region 13809	1077 bp distal
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	430 bp upstream
Tssr9817	transcription start site region 9817	644 bp upstream