rs3144011 SNP Detail

Summary

• ID
  rs3144011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118219104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG ACTCGAGGCC CCGCCCTCAG
  Y
  TCGGTCACGG CGCGGGCTGG AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5054676	WI_WGS_2_119326606	WI	MOUSE	f	SNP			C	T
ss147298147	ENSMUSSNP1503626	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320469143	CHEV_2_118214359	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3144011					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118219104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	within coordinates
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	mRNA-UTR
Rr397204	regulatory region 397204	within coordinates
Rr563227	regulatory region 563227	within coordinates
Rr563228	regulatory region 563228	500 bp proximal
Tssr19554	transcription start site region 19554	17 bp downstream
Tssr19555	transcription start site region 19555	within coordinates
Tssr19556	transcription start site region 19556	28 bp upstream
Tssr19557	transcription start site region 19557	51 bp upstream