rs3144012 SNP Detail

Summary

• ID
  rs3144012
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118219150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CCCTACCCAC CCCAGAATCA
  M
  CGCTACCTCG CCTAGGCCGC TGCGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5054777	WI_WGS_2_119326652	WI	MOUSE	f	SNP			A	C
ss147298150	ENSMUSSNP1495071	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss320469144	CHEV_2_118214405	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144012					SNP	A	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118219150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	within coordinates
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	mRNA-UTR
Rr397204	regulatory region 397204	within coordinates
Rr563227	regulatory region 563227	within coordinates
Rr563228	regulatory region 563228	454 bp proximal
Tssr19554	transcription start site region 19554	63 bp downstream
Tssr19555	transcription start site region 19555	29 bp downstream
Tssr19556	transcription start site region 19556	within coordinates
Tssr19557	transcription start site region 19557	5 bp upstream