rs3144014 SNP Detail

Summary

• ID
  rs3144014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118219640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GCCTCGAGGT GGGTTGTGAC
  Y
  GCACATTCAT AGTCACTCAT TGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37653111	NES09022192	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		T	C	C	T		C
ss147298177	ENSMUSSNP4547956	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						C
ss320469149	CHEV_2_118214895	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144014					SNP	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653111	NES09022192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118219640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	184 bp distal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	Intron
Rr397204	regulatory region 397204	407 bp downstream
Rr563227	regulatory region 563227	37 bp distal
Rr563228	regulatory region 563228	within coordinates
Tssr19554	transcription start site region 19554	553 bp downstream
Tssr19555	transcription start site region 19555	519 bp downstream
Tssr19556	transcription start site region 19556	490 bp downstream
Tssr19557	transcription start site region 19557	476 bp downstream