rs31440692 SNP Detail

Summary

• ID
  rs31440692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85967281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG GCTAGCCACT GAATGCTTAC
  R
  GTCCGGTCAG GATGTTTTCA GTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45033570	mCV24373492	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss144872186	ENSMUSSNP5190875	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31440692					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85967281 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	533 bp distal
Rr414458	regulatory region 414458	549 bp proximal
Tssr140	transcription start site region 140	100 bp upstream
Tssr7715	transcription start site region 7715	79 bp upstream
Tssr7716	transcription start site region 7716	104 bp upstream