rs3144174 SNP Detail

Summary

• ID
  rs3144174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118374187 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGAT TCTTTCCTGC ACATTTAATC
  Y
  ACCTTGGTCG TATTCCATGG CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45297532	mCV23829007	ABI	CRAMUS_MOUSE	r	SNP	A	A	A	G	A
ss147304394	ENSMUSSNP3583937	ENSEMBL	ENSEMBL_Sanger	r	SNP			A
ss320470267	CHEV_2_118369442	CHEVERUD	SCREENING_POP	r	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3144174					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118374187 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmf	BCL2 modifying factor			Intron
				Noncoding-Transcript-Variant
Cpgi12082	CpG island 12082			678 bp proximal
Rr563262	regulatory region 563262			362 bp distal
Tssr25777	transcription start site region 25777			1456 bp downstream
Tssr25778	transcription start site region 25778			1604 bp downstream