rs3144283 SNP Detail

Summary

• ID
  rs3144283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118535805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TCAGTCAGGA AGACGAACCC
  R
  GGACTGAGAA CATCTGCTAA ATGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147310192	ENSMUSSNP4714350	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320471377	CHEV_2_118531060	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3144283					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118535805 () rs orientation: forward

Symbol	Name	Function Class
Ankrd63	ankyrin repeat domain 63	1361 bp upstream
Cpgi12089	CpG island 12089	628 bp distal
Rr563306	regulatory region 563306	1839 bp distal
Rr563307	regulatory region 563307	871 bp distal
Rr563308	regulatory region 563308	1143 bp proximal
Rr563309	regulatory region 563309	1232 bp proximal